LOR.collect_lor_codes_by_prefix¶

LOR.collect_lor_codes_by_prefix(prefix, update=False, verbose=False)[source]¶

Collect PRIDE/LOR codes by a given prefix.

Parameters

prefix (str) – prefix of LOR codes
update (bool) – whether to check on update and proceed to update the package data, defaults to False
verbose (bool) – whether to print relevant information in console as the function runs, defaults to False

Returns

LOR codes for the given prefix

Return type

dict or None

Examples:

>>> from pyrcs.line_data import LOR

>>> lor = LOR()

>>> lor_codes_cy = lor.collect_lor_codes_by_prefix(prefix='CY')

>>> type(lor_codes_cy)
dict
>>> list(lor_codes_cy.keys())
['CY', 'Notes', 'Last updated date']
>>> type(lor_codes_cy['CY'])
pandas.core.frame.DataFrame

>>> lor_codes_nw = lor.collect_lor_codes_by_prefix(prefix='NW')
>>> list(lor_codes_nw.keys())
['NW/NZ', 'Notes', 'Last updated date']

>>> lor_codes_ea = lor.collect_lor_codes_by_prefix(prefix='EA')
>>> ea_dat = lor_codes_ea['EA']
>>> type(ea_dat)
dict
>>> list(ea_dat.keys())
['Current system', 'Original system']
>>> print(ea_dat['Current system']['EA'].head())
     Code  ... Line Name Note
0  EA1000  ...           None
1  EA1010  ...           None
2  EA1011  ...           None
3  EA1012  ...           None
4  EA1013  ...           None
[5 rows x 5 columns]