LOR.fetch_codes

LOR.fetch_codes(update=False, dump_dir=None, verbose=False)

Fetch data of PRIDE/LOR codes.

Parameters

  • update (bool) – whether to do an update check (for the package data), defaults to False

  • dump_dir (str or None) – pathname of a directory where the data file is dumped, defaults to None

  • verbose (bool or int) – whether to print relevant information in console, defaults to False

Returns

LOR codes

Return type

dict

Examples:

>>> from pyrcs.line_data import LOR  # from pyrcs import LOR

>>> lor = LOR()

>>> lor_codes_dat = lor.fetch_codes()
>>> type(lor_codes_dat)
dict
>>> l_codes = lor_codes_dat['LOR']
>>> type(l_codes)
dict
>>> list(l_codes.keys())
['CY', 'EA', 'GW', 'LN', 'MD', 'NW/NZ', 'SC', 'SO', 'SW', 'XR']

>>> cy_codes = l_codes['CY']
>>> type(cy_codes)
dict
>>> list(cy_codes.keys())
['CY', 'Notes', 'Last updated date']
>>> cy_codes['CY']
     Code  ... Line Name Note
0   CY240  ...           None
1  CY1540  ...           None

[2 rows x 5 columns]